PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P09800_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HD-ZIP
Protein Properties Length: 241aa    MW: 26914.4 Da    PI: 9.0461
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P09800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-18100154256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ ++tkeq   Le+ F+++ +++ ++++ LA++l+L  rqV vWFqNrRa+ k
  GSMUA_Achr9P09800_001 100 RKKLRLTKEQSALLEDKFKEHATLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 154
                            788899***********************************************98 PP

2HD-ZIP_I/II118.43.9e-38100188189
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rl+keq++lLE++F+e+ +L+p++K++lar+L+l+prqv+vWFqnrRARtk+k++E+++e+L++++++l+een+rL +e +eL+
  GSMUA_Achr9P09800_001 100 RKKLRLTKEQSALLEDKFKEHATLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKKTEVECEFLRKCCETLREENRRLLQEIQELK 187
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 e 89 
                            +
  GSMUA_Achr9P09800_001 188 S 188
                            4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-1874157IPR009057Homeodomain-like
SuperFamilySSF466893.13E-1895157IPR009057Homeodomain-like
PROSITE profilePS5007117.21696156IPR001356Homeobox domain
SMARTSM003891.7E-1598160IPR001356Homeobox domain
CDDcd000862.46E-16100157No hitNo description
PfamPF000467.3E-16100154IPR001356Homeobox domain
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PfamPF021833.0E-7156188IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-16156199IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEVYDDRDDV QETALSLRLN YDGGSSHLST GDHPRPQAAT PVEPSLTLVL PSMACSVSGV  60
VGRMPSSHSV ISSISGGRPS KVKRENDGRI SDEEEDGAAR KKLRLTKEQS ALLEDKFKEH  120
ATLNPKQKQA LARQLNLRPR QVEVWFQNRR ARTKLKKTEV ECEFLRKCCE TLREENRRLL  180
QEIQELKSLD LQAPRYMHPP GGAAAGTFQT CPSCKNRDEG GSPAVAPKTR FFNPFAHSAA  240
Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416790.11e-180PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X1
SwissprotP466041e-62HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLM0TYY91e-180M0TYY9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P09800_0011e-180(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-63HD-ZIP family protein